Ask about this productRelated genes to: DPPA5 antibody
- Gene:
- DPPA5 NIH gene
- Name:
- developmental pluripotency associated 5
- Previous symbol:
- -
- Synonyms:
- Esg1
- Chromosome:
- 6q13
- Locus Type:
- gene with protein product
- Date approved:
- 2003-07-23
- Date modifiied:
- 2018-04-24
Related products to: DPPA5 antibody
Related articles to: DPPA5 antibody
- Pseudomonas aeruginosa is an opportunistic pathogen with high antibiotic resistance that infects immunocompromised patients. Its survival in diverse environments relies on nutrient uptake systems such as the dipeptide permease (Dpp), an ATP-binding cassette transporter that imports di- and tripeptides. Unlike other bacteria, whose Dpp includes a single solute-binding protein that binds substrates in the periplasm, P. aeruginosa encodes five paralogs (DppA1-5), the functional significance of which remains unclear. Here, we systematically profile the ligand specificities of all five DppA proteins using Differential Scanning Fluorimetry with a library of 281 di- and tripeptides. We find that DppA1 and DppA3 preferentially bind dipeptides, whereas DppA2 and DppA4 favor tripeptides. DppA5 shows no detectable binding, suggesting a divergent function. Ligand binding is highly structure-sensitive and distinct across DppA paralogs. A comparative reanalysis of published nutrient utilization data for dppA1-5 suggests that previous studies underestimated this functional specialization. In contrast, our findings indicate that P. aeruginosa encodes multiple DppA paralogs to expand Dpp substrate scope and enhance nutrient acquisition. This work provides a foundation for further exploration of the Dpp in bacterial signaling and its exploitation for drug delivery via Trojan Horse antimicrobials. - Source: PubMed
Publication date: 2025/12/23
Plöchl KonstantinBöttcher Thomas - Embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) have unique characteristics where they can both contribute to all three germ layers in vivo and self-renewal indefinitely in vitro. Post-translational modifications of proteins, particularly by the ubiquitin proteasome system (UPS), control cell pluripotency, self-renewal, and differentiation. A significant number of UPS members (mainly ubiquitin ligases) regulate pluripotency and influence ESC differentiation with key elements of the ESC pluripotency network (including the "master" regulators NANOG and OCT4) being controlled by ubiquitination. To further understand the role of the UPS in pluripotency, we performed an RNAi screen during induction of cellular reprogramming and have identified FBXO9 as a novel regulator of pluripotency associated protein DPPA5. Our findings indicate that FBXO9 silencing facilitates the induction of pluripotency through decreased proteasomal degradation of DPPA5. These findings identify FBXO9 as a key regulator of pluripotency. - Source: PubMed
Swenson Samantha ADobish Kasidy KPeters Hendrik CBea Winship CWillow Hynes-Smith RCaplan MikaWittorf Karli JGhosal GargiBuckley Shannon M - Using an integrated bioinformatics approach to find novel biomarkers that can predict asthma severity. From June 2022 to December 2022, this clinical medical study was conducted and completed in the Department of Allergy, Zhongnan Hospital of Wuhan University. The gene chip dataset GSE43696 was screened and downloaded from the high-throughput Gene Expression Omnibus (GEO) database, and the gene chip data preprocessing was completed using package "affy" in R and "rma" algorithm in turn. Use the the "edgeR" and "limma" packages to screen out the differentially expressed genes (DEGs) between normal controls, mild to moderate asthma patients and severe asthma patients, and then use the "clusterProfiler" package to perform GO enrichment analysis and KEGG pathway enrichment analysis of DEGs, finally use the STRING website to construct a protein-protein interaction (PPI) network of DEGs to further screen key genes. Using the R language "WGCNA" package, the weighted gene co-expression network analysis (WGCNA) was performed on the dataset GSE43696, and the modules significantly related to the severity of asthma were screened out, then the hub genes were obtained by intersecting the WGCNA analysis results with the DEGs screened by PPI. Datasets GSE43696 and GSE63142 were used to verify the expression of hub genes, and the diagnostic value was evaluated according to the ROC curve, then the potential function of hub genes in dataset GSE43696 was further clarified by gene set enrichment analysis (GSEA). The results showed that a total of 251 DEGs were screened, including 39 in the normal group and mild to moderate asthma group, 178 in the normal group and severe asthma group, and 34 in the mild to moderate asthma group and severe asthma group, mainly involved in biological processes such as response to toxic substance, response to oxidative stress, extracellular structure organization, extracellular matrix organization. Two modules significantly correlated with asthma severity were screened out (red module, =7e-6, 0.43; pink module, 5e-8, -0.51), and finally six hub genes were obtained, including , , , , and . The comparison of gene expression levels and ROC curve analysis of datasets GSE43696 and GSE63142 further verified the six hub genes, which may associated with o-glycan biosynthesis, alpha linolenic acid metabolism, linoleic acid metabolism, pentose and glucoronate interconversions. In conclusion, through a variety of bioinformatics analysis methods, this study identified six hub genes significantly related to the severity of asthma, which potentially provided a new direction for the prediction and targeted therapy of asthma. - Source: PubMed
Xiao Z MYan XLi FXiao K WLiu G H - Researchers currently lack standardized porcine-specific markers that would aid in distinguishing the naïve and primed states of porcine embryonic stem cells (ESCs). Here, we converted naïve-like porcine ESCs (nESCs, established in our lab) into primed-state cells, and we proposed a set of molecular criteria for evaluating the naïve porcine ESCs by comparing the two cell states. The reverse-primed porcine ESCs (rpESCs) are phenotypically stable and karyotypically intact. Alkaline phosphatase positivity and the ability to form embryonic bodies suggest that rpESCs still retain the capacity for self-renewal. Lineage-associated genes, such as Cdx2, Sox17, Eomes, Foxa, Fgf5, and Pitx2, exhibited significant expression in rpESCs. Nonetheless, LIF/3i-grown porcine ESCs treated with the small molecular weight inhibitors CHIR99021, PD0325901, and SB431542 expressed the greatest number of pluripotency marker genes, including Oct4, Sox2, Nog, Dppa5, Nr0b1, and Klf4, and at higher levels than were observed in rpESCs. Despite their general trend toward higher expression of critical pluripotency factors, the nESCs showed downregulation of Tbx3, Nanog, and c-Myc, which are considered typical naïve factors in other species. Entry of the nESCs into the developmentally primed state was also associated with a marked reduction in Lin28 expression. These findings extend the knowledge of porcine pluripotency markers and provide a backdrop for future analysis of naïve porcine pluripotency. - Source: PubMed
Publication date: 2020/05/19
Chen QiaoyuZhang HongJiang HaibinZhang ManlingWang JunzhengZhao LihuaWang ChenyuLiu ManlingLi Rongfeng - During the cultivation of spermatogonial stem cells (SSCs) and their conversion into embryonic stem-like (ES-like) cells, transitional ES-like colonies and epiblast-like cells were observable. In the present experimental study, we aimed to analyze the efficiency of the multipotency or pluripotency potential of ES-like cells, transitional colonies and epiblast-like cells. - Source: PubMed
Publication date: 2019/06/15
Azizi HosseinAsgari BehruzSkutella Thomas